This is a comparative analysis for kallisto VS
STAR gene level counts.
The counts were generated from this RNAseq script with kallisto and STAR tools.
| Steps | kallisto | STAR |
|---|---|---|
| Index | ~10 min | ~45 min |
| Alignment | ~2-2h20/sample | ~3-4h/sample |
| Name | Type | Sample |
|---|---|---|
| NS.2108.003.UDP0200_i7—UDP0200_i5.RNA_0005_5598_Sain_R1 | Sain | 5598 |
| NS.2108.003.UDP0201_i7—UDP0201_i5.RNA_0006_5598_Tumeur_R1 | Tumeur | 5598 |
| NS.2108.003.UDP0202_i7—UDP0202_i5.RNA_0009_5268_Sain_R1 | Sain | 5268 |
| NS.2108.003.UDP0203_i7—UDP0203_i5.RNA_0010_5268_Tumeur_R1 | Tumeur | 5268 |
| NS.2108.003.UDP0204_i7—UDP0204_i5.RNA_0011_5402_Sain_R1 | Sain | 5402 |
| NS.2108.003.UDP0205_i7—UDP0205_i5.RNA_0012_5402_Tumeur_R1 | Tumeur | 5402 |
| NS.2108.003.UDP0206_i7—UDP0206_i5.RNA_0017_5487_Sain_R1 | Sain | 5487 |
| NS.2108.003.UDP0207_i7—UDP0207_i5.RNA_0018_5487_Tumeur_R1 | Tumeur | 5487 |
kallisto VS STAR