Kallisto report

Introduction

This is a comparative analysis for kallisto VS STAR gene level counts.

The counts were generated from this RNAseq script with kallisto and STAR tools.

kallisto vs STAR execution time

Steps	kallisto	STAR
Index	~10 min	~45 min
Alignment	~2-2h20/sample	~3-4h/sample

List of samples

Name	Type	Sample
NS.2108.003.UDP0200_i7—UDP0200_i5.RNA_0005_5598_Sain_R1	Sain	5598
NS.2108.003.UDP0201_i7—UDP0201_i5.RNA_0006_5598_Tumeur_R1	Tumeur	5598
NS.2108.003.UDP0202_i7—UDP0202_i5.RNA_0009_5268_Sain_R1	Sain	5268
NS.2108.003.UDP0203_i7—UDP0203_i5.RNA_0010_5268_Tumeur_R1	Tumeur	5268
NS.2108.003.UDP0204_i7—UDP0204_i5.RNA_0011_5402_Sain_R1	Sain	5402
NS.2108.003.UDP0205_i7—UDP0205_i5.RNA_0012_5402_Tumeur_R1	Tumeur	5402
NS.2108.003.UDP0206_i7—UDP0206_i5.RNA_0017_5487_Sain_R1	Sain	5487
NS.2108.003.UDP0207_i7—UDP0207_i5.RNA_0018_5487_Tumeur_R1	Tumeur	5487

Read counts kallisto VS STAR

Comparative analysis graphs